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Mapping genetic interactions is essential for determining gene function and defining novel biological pathways. We report a simple to use CRISPR interference (CRISPRi) based platform, compatible with Fluorescence Activated Cell Sorting (FACS)-based reporter screens, to query epistatic relationships at scale. This is enabled by a flexible dual-sgRNA library design that allows for the simultaneous delivery and selection of a fixed sgRNA and a second randomized guide, comprised of a genome-wide library, with a single transduction. We use this approach to identify epistatic relationships for a defined biological pathway, showing both increased sensitivity and specificity than traditional growth screening approaches.more » « less
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Qiu, Xiaojie; Zhang, Yan; Martin-Rufino, Jorge D.; Weng, Chen; Hosseinzadeh, Shayan; Yang, Dian; Pogson, Angela N.; Hein, Marco Y.; Hoi; Wang, Li; et al (, Cell)
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